Ensembl S.cerevisiae

 

Karyotype

Click on a chromosome for a closer view

Yeast karyotype selector

Jump directly to sequence position

Chromosome: or region
From (bp):
To (bp):

About the S. cerevisiae genome

Assembly and Annotation

Saccharomyces cerevisiaeThe data on this site is a direct import of the Saccharomyces Genome Database dataset for the Saccharomyces cerevisiae S288C genome. No additional genebuild was carried out, but a series of blast runs was done to provide ESTs, Swall hits, and other similarity data.

We have included S.cerevisiae into the Ensembl system to allow people to access the data through the Ensembl user interface (both for visualisation and data mining) and to provide cross-species integration through our comparative genomics resources (such as homologous gene links and protein family/domain pages).

The canonical data for S.cerevisiae is managed at SGD.

Image courtesy American Society for Microbiology

What's New in Ensembl 37

Saccharomyces cerevisiae News

  • SSAHA2
    Transcript-based SSAHA2 servers are now available for all species. Go to BlastView and select SSAHA2 from the Search Tool box.
  • UniProt updates
    Support has been added for variable splice UniProt records by adding an external db with a display label of "UniprotKB/SpliceVariant" to the external_db table on all databases.
    Read more...
  • GeneSeqalignView
    This new view is based on GeneSeqView, with the added ability to align the given sequence with one or more species.
    Read more...
  • Bug fix to Transcript.pm
    Transcript.pm; is_known() was returning true if the transcript had a display_xref set, which is both incorrect and inconsistent with the is_known() method in Gene.pm. The new behaviour is to return true if the transcript's status is KNOWN.
  • Change to xref.display_label field
    The width of xref.display_label has been extended to 128 characters to cope with the longer labels produced by gene name & GO term projection.

More news...

Statistics

Assembly: SGD 1, Nov 2005
Genebuild: SGD, Nov 2005
Database version: 37.1d
Known genes: 6,680
Pseudogenes: 21
RNA genes: 397
Genscan gene predictions: 5,077
Genefinder gene predictions: 3,311
Gene exons: 7,026
Gene transcripts: 6,680
Base Pairs: 12,156,590
Golden Path Length: 12,156,590
Most common InterPro domains: Top 40 Top 500

 

© 2008 WTSI / EBI. Ensembl is available to download for public use - please see the code licence for details.

                
Ensembl v37 - Feb 2006
Help