Ensembl .
About Ensembl Powered by EnsemblThe Ensembl project is both a source of genome sequence related data (http://www.ensembl.org) and an open source software system that can be used to organise any such data.
Some projects make use of the Ensembl software system, or are derived from it.
| Project | Description | Code used |
|---|---|---|
| Vega | Website to present curated vertebrate annotation | Web front-end derived from Ensembl webcode; Ensembl database and Perl API |
| Glovar | The Glovar Genome Browser shows sequence variation in a genomic context | |
| DeCIFR legume project | Automated annotation and display of legume genomes | Customised Ensembl pipeline, API, and webcode |
| AtEnsembl | Arabidopsis thaliana genome browser | Customised Ensembl pipeline, API, and webcode |
| Otter | Database backend for interactive curation of annotation | Otter is an extension of the Ensembl database schema |
| Gramene | A Comparative Mapping Resource for Grains | Customised webcode, Ensembl Compara pipeline, Ensembl database used for annotation, import of the Arabidopsis Ensembl database from NASC. |
| CADRE | Central Aspergillus Data REpository | |
| Sigenae | Sigenae EST ContigBrowser | |
| COSMIC (Catalogue of Somatic Mutations in Cancer) | Web display of somatic sequence variant/mutation data | Customised Ensembl drawing code |
| MVP (Methylation Variable Positions) | Web display of MVPs analysed in the Human Epigenome Project. | Customised Ensembl drawing code |
| S. pombe Gene Expression Viewer | Web display of S. pombe gene expression under various environmental conditions. | Customised Ensembl drawing code |
© 2008 WTSI / EBI. Ensembl is available to download for public use - please see the code licence for details.
